fix: close CLI term gaps — workspace rejection, stale types, quiet, placebo, help

src/cli/commands/doctor/index.ts

@@ -26,16 +26,6 @@ import { runDocsChecks } from './checks/docs.js';
 
 import { renderJson } from '../../renderers/json.js';
 
-// Deterministic string-to-seed hash (FNV-1a)
-function hashStringToSeed(str: string): number {
-  let hash = 0x811c9dc5
-  for (let i = 0; i < str.length; i++) {
-    hash ^= str.charCodeAt(i)
-    hash = Math.imul(hash, 0x01000193)
-  }
-  return Math.abs(hash >>> 0)
-}
-
 // ---------------------------------------------------------------------------
 // Types
 // ---------------------------------------------------------------------------
@@ -206,17 +196,6 @@ async function runPackageChecks(
     checks.push({ ...result, package: packageName });
   }
 
-  // 6. Determinism trust signal
-  const testSeed = hashStringToSeed(packageName + cwd);
-  checks.push({
-    name: 'determinism',
-    status: 'pass',
-    message: `Environment supports deterministic replay (test seed: ${testSeed})`,
-    detail: `Run with --seed ${testSeed} to reproduce the exact same test sequence`,
-    mode: 'all',
-    package: packageName,
-  });
-
   return checks;
 }
 

src/cli/commands/init/index.ts

@@ -622,7 +622,7 @@ function parseInitOptions(args: string[], ctx: CliContext): InitOptions {
 export async function handleInit(args: string[], ctx: CliContext): Promise<number> {
   const result = await initHandler(args, ctx);
 
-  if (result.message) {
+  if (result.message && !ctx.options.quiet) {
     console.log(result.message);
   }
 

src/cli/commands/observe/index.ts

@@ -328,6 +328,20 @@ export async function handleObserve(
         checks: result.checks,
         message: result.message,
       }) + '\n');
+    } else if (format === 'json-summary') {
+      console.log(renderJson({
+        exitCode: result.exitCode,
+        checks: result.checks,
+        message: result.message,
+      }));
+    } else if (format === 'ndjson-summary') {
+      process.stdout.write(JSON.stringify({
+        type: 'run.completed',
+        command: 'observe',
+        exitCode: result.exitCode,
+        checks: result.checks,
+        message: result.message,
+      }) + '\n');
     } else {
       console.log(result.message);
     }

src/cli/commands/qualify/index.ts

@@ -68,7 +68,7 @@ export interface QualifyOptions {
   changed?: boolean
   config?: string
   cwd?: string
-  format?: 'human' | 'json' | 'ndjson'
+  format?: 'human' | 'json' | 'ndjson' | 'json-summary' | 'ndjson-summary'
   quiet?: boolean
   verbose?: boolean
   artifactDir?: string

src/cli/commands/verify/index.ts

@@ -59,7 +59,7 @@ export interface VerifyOptions {
   changed?: boolean
   config?: string
   cwd?: string
-  format?: 'human' | 'json' | 'ndjson'
+  format?: 'human' | 'json' | 'ndjson' | 'json-summary' | 'ndjson-summary'
   quiet?: boolean
   verbose?: boolean
   artifactDir?: string

src/cli/core/index.ts

@@ -54,9 +54,9 @@ function getCommandHelp(command: string): string {
     apophis init [options]
 
   ${pc.dim('Options:')}
-    --preset <name>     Preset name (e.g. safe-ci, full)
-    --force             Overwrite existing files
-    --noninteractive    Skip all prompts, require explicit flags
+    --preset, -p <name>  Preset name (e.g. safe-ci, full)
+    --force, -f          Overwrite existing files
+    --noninteractive     Skip all prompts, require explicit flags
 
   ${pc.dim('Examples:')}
     apophis init --preset safe-ci
@@ -116,9 +116,11 @@ function getCommandHelp(command: string): string {
 
   ${pc.dim('Options:')}
     --artifact <path>   Path to failure artifact
+    --route <filter>    Select failure by route pattern
 
   ${pc.dim('Examples:')}
     apophis replay --artifact reports/apophis/failure-*.json
+    apophis replay --artifact failure-1.json --route "POST /users"
 `,
     doctor: `
   ${pc.bold('apophis doctor')} — Validate config, environment safety, docs/example correctness
@@ -377,8 +379,8 @@ export async function main(argv: string[] = process.argv.slice(2)): Promise<numb
     const commandSpecificFlags: Record<string, Set<string>> = {
       init: new Set(['--preset', '-p', '--force', '-f', '--noninteractive']),
       verify: new Set(['--profile', '--routes', '--seed', '--changed', '--workspace']),
-      observe: new Set(['--profile', '--check-config', '--workspace']),
-      qualify: new Set(['--profile', '--seed', '--workspace', '--changed']),
+      observe: new Set(['--profile', '--check-config']),
+      qualify: new Set(['--profile', '--seed', '--changed']),
       replay: new Set(['--artifact', '--route']),
       doctor: new Set(['--mode', '--strict', '--workspace']),
       migrate: new Set(['--check', '--dry-run', '--write']),